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Genomics & Transcriptomics / Metagenomics analysis

Data and tools for metagenomic analysis including reference databases

QIIME QIIME

Quantitative insights into microbial ecology

Quantitative insights into microbial ecology

128 Upvoted

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IMG

IMG IMG

Integrated microbial genomes from all three domains of life

Integrated microbial genomes from all three domains of life

98 Upvoted

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Human Microbiom... Human Microbiome Project

Access all HMP data

Access all HMP data

69 Upvoted

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GOLD

GOLD GOLD

Access data from projects worldwide on genome, metagenome and met...

Access data from projects worldwide on genome, metagenome and metadata

64 Upvoted

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Silva Silva

Quality checked and aligned ribosomal RNA sequence data

Quality checked and aligned ribosomal RNA sequence data

61 Upvoted

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Kaiju Kaiju

Fast and sensitive taxonomic classification for metagenomics

Fast and sensitive taxonomic classification for metagenomics

59 Upvoted

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Recentrifuge Recentrifuge

Robust comparative analysis and contamination removal for metagen...

Robust comparative analysis and contamination removal for metagenomic data

58 Upvoted

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MG-RAST MG-RAST

Analyze metagenomes

Analyze metagenomes

57 Upvoted

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EZTaxon EZTaxon

Identify prokaryotes based on 16S gene sequences

Identify prokaryotes based on 16S gene sequences

57 Upvoted

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metaWRAP

metaWRAP metaWRAP

A comprehensive pipeline for metagenomic analysis

A comprehensive pipeline for metagenomic analysis

57 Upvoted

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Centrifuge

Centrifuge Centrifuge

Rapid classifier for metagenomic sequences

Rapid classifier for metagenomic sequences

57 Upvoted

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MicrobiomeAnaly... MicrobiomeAnalyst

Comprehensive statistical, visual and meta-analysis of microbiome...

Comprehensive statistical, visual and meta-analysis of microbiome data

56 Upvoted

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