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Data & Tools by model organism / Bacteria

Databases and tools for research in bacteria

BioCyc BioCyc

Find Pathway/Genome Databases

Find Pathway/Genome Databases

133 Upvoted

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EcoCyc EcoCyc

Encyclopedia of Escherichia coli genes and metabolism

Encyclopedia of Escherichia coli genes and metabolism

95 Upvoted

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CFU Scope CFU Scope

App for precise calculation of the number of colonies in an agar...

App for precise calculation of the number of colonies in an agar plate

60 Upvoted

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In silico PCR...

In silico PCR... In silico PCR for bacteria

In-silico PCR using up to date sequenced bacterial genomes

In-silico PCR using up to date sequenced bacterial genomes

58 Upvoted

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bcgTree bcgTree

Build phylogenetic tree from bacterial core genomes

Build phylogenetic tree from bacterial core genomes

58 Upvoted

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ISfinder ISfinder

Reference centre for bacterial insertion sequences

Reference centre for bacterial insertion sequences

55 Upvoted

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DoriC

DoriC DoriC

Find data on predicted oriC regions

Find data on predicted oriC regions

54 Upvoted

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HGTree

HGTree HGTree

Find data on horizontally transferred genes using tree reconcilia...

Find data on horizontally transferred genes using tree reconciliation

54 Upvoted

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sRNATarBase

sRNATarBase sRNATarBase

sRNA-target interactions in bacteria

sRNA-target interactions in bacteria

53 Upvoted

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SignalP

SignalP SignalP

Predict signal peptide cleavage sites in sequences

Predict signal peptide cleavage sites in sequences

53 Upvoted

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colibase

colibase colibase

Find data on Escherichia coli, Shigella and Salmonella comparativ...

Find data on Escherichia coli, Shigella and Salmonella comparative genomics

53 Upvoted

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BacWGSTdb

BacWGSTdb BacWGSTdb

Find data on genotyping & source tracking bacterial pathogens

Find data on genotyping & source tracking bacterial pathogens

53 Upvoted

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