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Protein & Peptide / Amino acids & Modification

Databases of amino acids, protein known modifications and tools to predict new modifications

HARMONY HARMONY

Protein structure validation server

Protein structure validation server

59 Upvoted

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AAindex

AAindex AAindex

Amino acid index database

Amino acid index database

56 Upvoted

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PEP-FOLD PEP-FOLD

De novo structure prediction for linear & disulfide cyclic peptid...

De novo structure prediction for linear & disulfide cyclic peptides

51 Upvoted

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Seq2Logo

Seq2Logo Seq2Logo

Construction and visualization of amino acid binding motifs

Construction and visualization of amino acid binding motifs

45 Upvoted

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PROVEAN

PROVEAN PROVEAN

Protein Variation Effect Analyzer

Protein Variation Effect Analyzer

45 Upvoted

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ADPriboDB ADPriboDB

Find ADP-ribosylated proteins

Find ADP-ribosylated proteins

38 Upvoted

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MutationAssesso... MutationAssessor

Predicts the functional impact of amino-acid substitutions in pro...

Predicts the functional impact of amino-acid substitutions in proteins.

33 Upvoted

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pro2nick pro2nick

Generate unique nicknames for engineered protein sequences

Generate unique nicknames for engineered protein sequences

29 Upvoted

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Vienna-PTM web... Vienna-PTM web server

Simulations of protein post-translational modifications

Simulations of protein post-translational modifications

26 Upvoted

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dbPTM

dbPTM dbPTM

Investigate substrate site specificity

Investigate substrate site specificity

26 Upvoted

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PocketQuery

PocketQuery PocketQuery

Find protein-protein interaction inhibitors

Find protein-protein interaction inhibitors

26 Upvoted

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EROP

EROP EROP

Oligopeptide database

Oligopeptide database

26 Upvoted

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