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RNA & DNA / microRNAs & RNAi

Databases and tools for working with microRNAs and RNAi including target prediction

miRBase miRBase

Find data on published miRNA sequences and annotation

Find data on published miRNA sequences and annotation

136 Upvoted

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TargetScan TargetScan

Search for predicted microRNA targets in mammals

Search for predicted microRNA targets in mammals

85 Upvoted

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microrna.org

microrna.org microrna.org

Find microRNA target predictions and expression profiles

Find microRNA target predictions and expression profiles

66 Upvoted

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ChIPBase

ChIPBase ChIPBase

Explore the transcriptional regulatory networks of ncRNAs and pro...

Explore the transcriptional regulatory networks of ncRNAs and protein-coding genes

61 Upvoted

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ONCO.IO ONCO.IO

An integrative resource for microRNA and transcription factors an...

An integrative resource for microRNA and transcription factors analysis in cancer

57 Upvoted

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WorMachine WorMachine

Machine Learning-Based Phenotypic Analysis Tool for Worms

Machine Learning-Based Phenotypic Analysis Tool for Worms

57 Upvoted

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DIANA-LncBase

DIANA-LncBase DIANA-LncBase

Find microRNA targets on long noncoding RNAs

Find microRNA targets on long noncoding RNAs

56 Upvoted

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MAGIA2 MAGIA2

Integrative analysis to microRNA-transcription factor expression

Integrative analysis to microRNA-transcription factor expression

55 Upvoted

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LncmiRSRN

LncmiRSRN LncmiRSRN

Identifying lncRNA related miRNA sponge causal network

Identifying lncRNA related miRNA sponge causal network

55 Upvoted

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TFmiR TFmiR

Construct and analyze disease-specific TF and mirna co-regulatory...

Construct and analyze disease-specific TF and mirna co-regulatory networks

55 Upvoted

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miRAW

miRAW miRAW

A deep learning-based approach to predict microRNA targets

A deep learning-based approach to predict microRNA targets

55 Upvoted

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STarMir STarMir

Predict microRNA binding sites

Predict microRNA binding sites

54 Upvoted

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