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@baldo.oliva Doubt regarding BIPS database

AISWARYA JAYAPRAKASH
Bioinformatician at Pondicherry University
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AISWARYA JAYAPRAKASH

Bioinformatician at Pondicherry University

@baldo.oliva Doubt regarding BIPS database Oval 17

I am giving a fasta file of 5000 protein sequences as input in BIPS data to identify its interaction. But after processing the input file, the database is showing this message - "Submitted 4217 sequences." I have submitted 5000 protein sequences but its considering only 4217 sequences as input. Why is it so?

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Posted: 10 months ago
Roy Granit
Co-founder at LabWorm
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Roy Granit

Co-founder at LabWorm

@AISWARYA.JAYAPRAKASH.907:u I suggest that you write on the @BIPS page so that the tool creator might reply. have you checked that that the fasta file is intact and indeed holds 5000 sequences? (e.g. cat file.fasta | grep > | wc -L )

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Posted: 10 months ago
AISWARYA JAYAPRAKASH
Bioinformatician at Pondicherry University
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AISWARYA JAYAPRAKASH

Bioinformatician at Pondicherry University

@rgranit:u the fasta file is intact and holds 5000 sequences. I rechecked it many times

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Posted: 10 months ago
Roy Granit
Co-founder at LabWorm
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Roy Granit

Co-founder at LabWorm

@AISWARYA.JAYAPRAKASH.907:u in that case I suggest you try to ask in the @BIPS page, the tool creator it there and will get a notification about your question (this is the general discussion..)

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Posted: 10 months ago
Roy Granit
Co-founder at LabWorm
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Roy Granit

Co-founder at LabWorm

@AISWARYA.JAYAPRAKASH.907:u oh.. I see you wrote there as well.. so let's wait for a reply

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Posted: 10 months ago