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Can anyone recommend a tools for SNP calling in bacteria?

Can anyone recommend a tools for SNP calling in bacteria? Oval 17

:thumbsup_tone2: Thanks!

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Posted: 2 months ago

Desmond Robins

École Polytechnique Fédérale de Lausanne

@Tim.Bradley:u I really like Snippy: https://github.com/tseemann/snippy .. only trouble is that it has some old perl dependencies so might be hard to setup

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Posted: 2 months ago

Roy Granit

Co-founder at LabWorm

@Tim.Bradley:u @Desmond.Robins:u just posted it to LabWorm.. @snippy :sunglasses:

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Posted: 2 months ago

@Desmond.Robins:u @rgranit:u thanks guys.. :thumbsup_tone1: I've struggled a bit the with the perl part (Time::Piece module was missing) but after a long battle got snippy to work, it's indeed a real handy tool

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Posted: 2 months ago