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What's your take on UMPs vs tSNE for single cells dimensionality reduction?

Roy Granit
Co-founder at LabWorm
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Roy Granit

Co-founder at LabWorm

What's your take on UMPs vs tSNE for single cells dimensionality reduction? Oval 17

In recent years tSNE was considered the golden standard for single cell dimensionality reduction and visualization, yet recently UMPs are gaining traction.. what is your opinion? which one are you using? :thinking:

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Posted: 7 months ago
David Greenstein
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@rgranit:u I believe that creating UMPs is faster.. so this is a big advantage. Yet, I still employ tSNE to match my previous figures :grin:

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Posted: 7 months ago