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Basepair

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 by Amit Sinha

Description

Basepair has been developed with one goal in mind: a scientist should be able to focus on making scientific discoveries, without worrying about managing large data volumes, struggling with computing infrastructure or constructing irreproducible analysis workflows. It brings together cutting-edge technologies in workflow automation, cloud computing, web-based applications and interactive visualization to NGS analysis.

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Amit Sinha
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Ask me anything about Basepair Oval 17

Hey Wormers! I'm the founder of Basepair, will be happy to answer questions.

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Posted: 4 years ago
Roy Granit
Co-founder at LabWorm
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Roy Granit

Co-founder at LabWorm

Hi Amit, Basepair looks like an amazing solution to the (painful) NGS analysis workflow!

Could you please comment on the ability to load & run custom scripts and use custom genomes via CLI? I rarely found myself running a 'standard' workflow..

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Posted: 4 years ago
Amit Sinha
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Hey Roy, we absolutely support custom genome and custom tools. We have the users put the scripts in a git or mercurial repo, then configure the modules and pipeline in YAML. Will be happy to get you started.

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Posted: 4 years ago
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