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Genomespace

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Suggested by: Roy Granit

Description

GenomeSpace is a cloud-based framework that supports integrative genomics analysis by providing an easy-to-use online interface. GenomeSpace allows to access to a diverse range of bioinformatics tools, and bridges the gaps between the tools, making it easy to leverage the available analyses and visualizations in each of them. The tools retain their native look and feel, with GenomeSpace providing frictionless conduits between them through a lightweight interoperability layer. GenomeSpace does not perform any analyses itself; these are done within the member tools wherever they are live desktop, Web service, cloud, in-house server, etc. Rather, GenomeSpace provides tool selection and launch capabilities, and acts as a data highway automatically reformatting data as required when results move from the output of one tool to input for the next. GenomeSpace started as a partnership between the Mesirov and Regev laboratories at the Broad Institute, the Chang laboratory at Stanford University, the Ideker laboratory at the University of California, San Diego, the Nekrutenko laboratory at Pennsylvania State University, the Segal laboratory at the Weizmann Institute of Science, and the Haussler and Kent laboratories at the University of California, Santa Cruz. This collaboration between leading researchers in the field and developers of some of the most prominent and widely-used tools for genomics analysis, sought to seed GenomeSpace with strong capabilities, drive its development with ongoing genomic research projects, and build an open environment for other tools and packages.

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Associated keywords

Cloud Analysis Genomics

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