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iPBA

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Suggested by: Gary Fromert

Description

iPBA is a tool for comparison of protein structures based on similarity in the local backbone conformation. The local backbone conformation is defined as pentapeptide dihedrals, using Protein Blocks (PBs). The protein structures represented as PB sequences, are aligned by dynamic programming scored by a PB substitution matrix. Structurally similar stretches are weighed using an anchor based alignment approach.

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