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JDotter

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 by Chris Upton

Description

Java tool to create dotplots. Uses Dotter engine. Parameters for plot can be changed on the fly, after plot completed.
With this program, you can:
create whole-genome, sub-genome or protein dot plots from user-supplied sequences; quickly load pre-calculated plots of complete genomes from VOCs database; view and navigate the plots to pinpoint insertions/deletions and evaluate overall genome similarity; print/save dot plots in JDotter or JPEG format.
Manuscript
Bioinformatics. 2004 Jan 22;20(2):279-81.
JDotter: a Java interface to multiple dotplots generated by dotter.
Brodie R1, Roper RL, Upton C.


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Chris Upton
Principal Investigator (PI) at University of Victoria
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Chris Upton

Principal Investigator (PI) at University of Victoria

JDotter information Oval 17

Java tool, platform independent

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Posted: 4 years ago
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