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LightDock

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 by Brian Jiménez-García

Suggested by: Roy Granit

Description

LightDock is a novel protein-protein docking framework based on the Glowworm Swarm Optimization (GSO) algorithm. The framework is written in the Python programming language and allows the users to incorporate their own scoring function. The framework can use either full-atom or coarse-grained representation, and includes the use of normal mode analysis to introduce backbone flexibility in the interacting molecules. Simulations using the framework can be chained using different force-fields at each independent simulation.

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