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NPDock

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Description

NPDock predicts complexes of protein-nucleic acid structures which implements a computational workflow that includes docking, scoring of poses, clustering of the best-scored models and refinement of the most promising solutions.

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Zeshan Haider
Bioinformatician at Government College University, Faisalabad
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Zeshan Haider

Bioinformatician at Government College University, Faisalabad

help Oval 17

how can i use npdock ?

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Posted: 1 year ago
Roy Granit
Co-founder at LabWorm
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Roy Granit

Co-founder at LabWorm

Currently npdock seems to be offline, hope that is just a temp issue with the server..  Basically you need to enter to the interface the PDB ID (3D structure prediction file) for the protein you would like to try and dock the nucleic acid and the PDB ID of that RNA/DNA molecule - npdock will next try to predict the optimal docking positions of the two and display the results


You may learn more in the original publication: https://academic.oup.com/nar/article/43/W1/W425/2467938/NPDock-a-web-server-for-protein-nucleic-acid

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Posted: 1 year ago
Zeshan Haider
Bioinformatician at Government College University, Faisalabad
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Zeshan Haider

Bioinformatician at Government College University, Faisalabad

but now np dock website is offline ,,but i want to urgent to work on it,when its website will open? and anyone now as another software for protein to dna docking? suggesst me  

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Posted: 1 year ago
Roy Granit
Co-founder at LabWorm
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Roy Granit

Co-founder at LabWorm

You may also use @patchdock for this purpose.. We have contracted the creators of NPDock and they assured us they are informed of the situation with their server and are working to get it up-and-running soon

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Posted: 1 year ago
Zeshan Haider
Bioinformatician at Government College University, Faisalabad
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Zeshan Haider

Bioinformatician at Government College University, Faisalabad

patch dock can use for proteien to dna docking

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Posted: 1 year ago
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Associated keywords

Acids Cluster Analysis Workflow

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