QuPath

QuPath is open source image analysis software, with a special focus on tissue analysis and digital pathology.

QuPath combines a range of useful features (e.g. a whole slide image viewer, annotation tools, tissue microarray dearraying (TMA), cell segmentation, interactive machine learning) with powerful scripting support. QuPath aims to provide the tools to improve the speed, objectivity and reproducibility of digital pathology analysis and biomarker interpretation for research applications.