<% _.each(terms.slice(0, 3), function(term, idx) { %>

<%= term._highlightResult.name.value %>

<% }) %>
Tools
Discover the best online tools to assist you in research

shinyChromosome

Are you the creator of this tool?

Suggested by: Roy Granit

Description

Interactive create non-circular plots of Whole Genomes

Discussion

Ask a question or post a review

Wen Yao
Staff member at Henan Agricultural University
View profile

Wen Yao

Staff member at Henan Agricultural University

shinyChromosome Oval 17

Non-circular plots of whole genomes are natural representations of genomic data aligned along all chromosomes. Currently, there is no specialized graphical user interface (GUI) designed to produce non-circular whole genome diagrams, and the use of existing tools requires considerable coding effort from users. Moreover, such tools also require improvement, including the addition of new functionalities. To address these issues, we developed a new R/Shiny application, named shinyChromosome, as a GUI for the interactive creation of non-circular whole genome diagrams. shinyChromosome can be easily installed on personal computers for own use as well as on local or public servers for community use. Publication-quality images can be readily generated and annotated from user input using diverse widgets. shinyChromosome is deployed at http://150.109.59.144:3838/shinyChromosome/, http://shinyChromosome.ncpgr.cn, and https://yimingyu.shinyapps.io/shinyChromosome for online use. The source code and manual of shinyChromosome are freely available at https://github.com/venyao/shinyChromosome.

upvotecomment_icon_normal 1 upvotes 0 comments Reply
Posted: 10 months ago
13  upvotes
0 collections
42 views
Show more

Associated keywords

Genome

Similar/Related tools