<% _.each(terms.slice(0, 3), function(term, idx) { %>

<%= term._highlightResult.name.value %>

<% }) %>
Tools People Collections
Discover the best online tools to assist you in research


Are you the creator of this tool?

Suggested by: Avital Cher


ShortBRED is a system for profiling protein families of interest at very high specificity in shotgun meta'omic sequencing data. ShortBRED-Identify collapses proteins of interest into families, and then screens these families (as represented by consensus sequences) against 1) each other and 2) a comprehensive protein reference. ShortBRED-Identify then identifies short, distinguishing peptide sequences ("markers") for each protein family. This process is performed once for a given set of proteins of interest to produce a reusable marker set (see below for examples of pre-computed markers). ShortBRED-Quantify then screens a metagenome or metatranscriptome against a given marker set to profile the presence/absence and relative abundance of the associated proteins.


Ask a question or post a review

0 collections
Show more

Associated keywords

References Peptides Proteins Metagenome

Similar/Related tools