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TEPIC

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Suggested by: Avital Cher

Description

Annotation of genomic regions using transcription factor binding sites and epigenetic data.

TEPIC offers workflows for the prediction and analysis of Transcription Factor (TF) binding sites including:

TF affinity computation in user provided regions
Computation of continuous and discrete TF-gene scores
Linear regression analysis to infer potential key regulators (INVOKE)
Logistic regression analysis to suggest regulators related to gene expression differences between samples (DYNAMITE)

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