RNA-Seq Blog RNA-Seq Blog
Transcriptome sequencing research & industry news
Transcriptome sequencing research & industry news
Cufflinks Cufflinks
Transcriptome assembly & differential expression analysis for RNA...
Transcriptome assembly & differential expression analysis for RNA-Seq
Subread Subread
High-performance read alignment, quantification and mutation disc...
High-performance read alignment, quantification and mutation discovery
Roadmap Epigeno... Roadmap Epigenomics Mapping Consortium
Resource of human epigenomic data
Resource of human epigenomic data
UCSC Genome Bro... UCSC Genome Browswer
Information rich browser with annotations of whole genomes
Information rich browser with annotations of whole genomes
GeneSCF GeneSCF
Gene Set Clustering based on Functional annotation
Gene Set Clustering based on Functional annotation
GeneSCF (Gene S... GeneSCF (Gene Set Clustering based on Functional annotation)
Gene Set Clustering based on Functional annotation
Gene Set Clustering based on Functional annotation
STAR STAR
RNA-seq Spliced Transcripts Alignment to a Reference
RNA-seq Spliced Transcripts Alignment to a Reference
HISAT2 HISAT2
Graph-based alignment of next generation sequencing reads
Graph-based alignment of next generation sequencing reads
Ballgown Ballgown
Flexible, isoform-level differential expression analysis.
Flexible, isoform-level differential expression analysis.
Cutadapt Cutadapt
Remove adapter & other types of unwanted sequence from your HTS r...
Remove adapter & other types of unwanted sequence from your HTS reads
SAMStat SAMStat
Generate statistics of large sequence files from NGS projects
Generate statistics of large sequence files from NGS projects
PeakRanger PeakRanger
Multi-purporse software suite for analyzing NGS data
Multi-purporse software suite for analyzing NGS data
HOMER HOMER
Motif discovery and next generation sequencing analysis
Motif discovery and next generation sequencing analysis
GREAT GREAT
Assign biological meaning to a set of non-coding genomic regions
Assign biological meaning to a set of non-coding genomic regions
INKSCAPE INKSCAPE
Create a wide variety of graphics such as illustrations, icons, l...
Create a wide variety of graphics such as illustrations, icons, logos, diagrams, maps and web graphics
ComplexHeatmap ComplexHeatmap
Highly flexible way to arrange multiple heatmaps and support self...
Highly flexible way to arrange multiple heatmaps and support self-defined annotation graphics
CPAT CPAT
A fast and easy method to recognize coding and noncoding transcr...
A fast and easy method to recognize coding and noncoding transcripts from a large pool of candidates
CPC CPC
Coding Potential Calculator to assess the protein-coding potentia...
Coding Potential Calculator to assess the protein-coding potential of a transcript
ChromHMM ChromHMM
Chromatin state discovery and characterization
Chromatin state discovery and characterization
phantompeakqual... phantompeakqualtools
Compute informative enrichment and quality measures for ChIP-seq/...
Compute informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data