cBioPortal cBioPortal
Visualize and Analyze cancer genomics data from the TCGA project
Visualize and Analyze cancer genomics data from the TCGA project
qPrimerDepot qPrimerDepot
Find data on primers for real-time PCR for human genes
Find data on primers for real-time PCR for human genes
RNA-seqlopedia RNA-seqlopedia
Overview of RNA-seq & how to carry out a successful experiments
Overview of RNA-seq & how to carry out a successful experiments
CellProfiler CellProfiler
Quantitatively measure phenotypes from thousands of images automa...
Quantitatively measure phenotypes from thousands of images automatically
Currently, there are no tools in this collection.
Jupyter Jupyter
Create and share documents that contain live code, equations, & v...
Create and share documents that contain live code, equations, & visualizations.
protocols.io protocols.io
Discover & share science protocol knowledge
Discover & share science protocol knowledge
TopDom TopDom
Efficient and Deterministic Method for identifying Topological Do...
Efficient and Deterministic Method for identifying Topological Domains in Genomes
Crosshub Crosshub
Multi-way analysis of RNA-Seq, miRNA-Seq and methylome data provi...
Multi-way analysis of RNA-Seq, miRNA-Seq and methylome data provided in TCGA
DRYAD DRYAD
Make the data underlying scientific publications discoverable, fr...
Make the data underlying scientific publications discoverable, freely reusable, and citable
QCFAIL QCFAIL
Share common (and not so common) modes of error encountered when...
Share common (and not so common) modes of error encountered when processing data
BLOCK-iT BLOCK-iT
The easiest way to design effective RNAi molecules for great resu...
The easiest way to design effective RNAi molecules for great results
MultiQC MultiQC
Aggregate results from bioinformatics analyses across many sample...
Aggregate results from bioinformatics analyses across many samples into a single report
FireCloud FireCloud
Cloud-based cancer genomics analysis platform
Cloud-based cancer genomics analysis platform
BiSearch BiSearch
Primer-design algorithm for DNA sequences
Primer-design algorithm for DNA sequences
nextstrain nextstrain
Real-time tracking of Zika virus evolution
Real-time tracking of Zika virus evolution
Cancer Hotspots Cancer Hotspots
Statistically significant mutations in cancer
Statistically significant mutations in cancer
GeneValidator GeneValidator
Identify problematic gene predictions based on comparisons betwee...
Identify problematic gene predictions based on comparisons between gene predictions
lnCaNet lnCaNet
Co-expression between lncRNA and cancer genes
Co-expression between lncRNA and cancer genes
GESS GESS
Identify candidate off-targeted transcripts from RNAi screens dat...
Identify candidate off-targeted transcripts from RNAi screens data
MicroScope MicroScope
ChIP-seq and RNA-seq software analysis suite
ChIP-seq and RNA-seq software analysis suite
CIBERSORT CIBERSORT
Estimation of the abundances of member cell types in a mixed cell...
Estimation of the abundances of member cell types in a mixed cell population, using gene expression data
FPD FPD
Database for in vivo phosphosites in various fungi species
Database for in vivo phosphosites in various fungi species
Lobster Lobster
lobSTR is a tool for profiling Short Tandem Repeats (STRs) from h...
lobSTR is a tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data.
ZAGENO ZAGENO
Digital life sciences marketplace & comparison engine
Digital life sciences marketplace & comparison engine
SourceData SourceData
Make papers discoverable based on their data content
Make papers discoverable based on their data content
Endnote Endnote
Powerful research and reference manager, online and on your deskt...
Powerful research and reference manager, online and on your desktop
gitools gitools
Framework for visualization of multidimensional genomic data usin...
Framework for visualization of multidimensional genomic data using interactive heat-maps
Modeller Modeller
Homology or comparative modeling of protein three-dimensional str...
Homology or comparative modeling of protein three-dimensional structures
MediXgraph MediXgraph
Counting CFU (Colony-Forming Units) is a really tedious and error...
Counting CFU (Colony-Forming Units) is a really tedious and error prone routine during biological experiments. To address this, we develop an App (CFU Scope) which can precisely calculate the number of colonies in an agar plate. It usually takes several minutes to count one plate manually. With this App, it can be done automatically within 3 seconds. This can saves a lot of time for personals in biological labs.
Fluff Fluff
Create pretty, publication-quality figures for next-generation se...
Create pretty, publication-quality figures for next-generation sequencing experiments
Falco Falco
Process single-cell RNA-seq data on the cloud
Process single-cell RNA-seq data on the cloud
OBF OBF
Promote the practice and philosophy of Open Source software devel...
Promote the practice and philosophy of Open Source software development
CLIMB CLIMB
Cloud Infrastructure for Microbial Bioinformatics
Cloud Infrastructure for Microbial Bioinformatics
Bioboxes Bioboxes
Standard for creating interchangable bioinformatics software cont...
Standard for creating interchangable bioinformatics software containers
TelomereHunter TelomereHunter
Estimate telomere content from whole-genome sequencing data
Estimate telomere content from whole-genome sequencing data
Seven bridges Seven bridges
Conduct bioinformatic analyses on a cloud-based environment
Conduct bioinformatic analyses on a cloud-based environment
Genomespace Genomespace
Bridge the gaps between the tools using a cloud platform
Bridge the gaps between the tools using a cloud platform
traitar traitar
Characterize microbial samples from nucleotide or protein sequenc...
Characterize microbial samples from nucleotide or protein sequences
Scientific Prot... Scientific Protocols
Easy way to share scientific protocols
Easy way to share scientific protocols
DNAdigest DNAdigest
Securely share genomics data for research
Securely share genomics data for research
SciRate SciRate
Find the top arXiv papers in quantitative biology
Find the top arXiv papers in quantitative biology
FLOWJO FLOWJO
Analyze your flow-cytometry data on Mac or PC
Analyze your flow-cytometry data on Mac or PC
FCS express FCS express
FCS Express turns your flow cytometry data into results
FCS Express turns your flow cytometry data into results
Flowings Flowings
Free software for flow cytometry analysis
Free software for flow cytometry analysis
FocalScan FocalScan
Find altered genes in cancer based on coordinated DNA & RNA chang...
Find altered genes in cancer based on coordinated DNA & RNA changes
Membranome Membranome
Study single-spanning transmembrane proteins
Study single-spanning transmembrane proteins
SoyNet SoyNet
Uncover functional gene networks in soybean
Uncover functional gene networks in soybean
FireBrowse FireBrowse
Simple yet powerful way to explore cancer data
Simple yet powerful way to explore cancer data
T cell attak T cell attak
Fight cancer in the T Cells Attack game
Fight cancer in the T Cells Attack game
TiCo TiCo
Post-processing predictions of prokaryotic genes
Post-processing predictions of prokaryotic genes
PubMed journals PubMed journals
Find, Browse, and Follow Biomedical Journals
Find, Browse, and Follow Biomedical Journals
DNAApp DNAApp
Mobile application for sequencing data analysis
Mobile application for sequencing data analysis
NEB tools NEB tools
Find information about restriction enzymes on your mobile
Find information about restriction enzymes on your mobile
RCSB PDB Mobile RCSB PDB Mobile
Fast, on-the-go access to the RCSB PDB resources
Fast, on-the-go access to the RCSB PDB resources
Fluorescence Sp... Fluorescence SpectraViewer App
Plot and compare spectral curves on mobile
Plot and compare spectral curves on mobile
SciKey SciKey
Essential scientific characters for your iPad & iPhone
Essential scientific characters for your iPad & iPhone
BioCyc Pathway... BioCyc Pathway mobile
Mobile access to the BioCyc collection pathways
Mobile access to the BioCyc collection pathways
BEDOPS BEDOPS
Fast, highly scalable and easily-parallelizable genome analysis t...
Fast, highly scalable and easily-parallelizable genome analysis toolkit
RIO journal RIO journal
Catalyse change in research communication by publishing ideas, pr...
Catalyse change in research communication by publishing ideas, proposals and outcomes
MyScienceWork MyScienceWork
Global scientific platform for making your research more visible
Global scientific platform for making your research more visible
OpenML OpenML
An open science platform for machine learning
An open science platform for machine learning
shinyheatmap shinyheatmap
Highly customizable static and interactive heatmaps in a web brow...
Highly customizable static and interactive heatmaps in a web browser
EnzymeX EnzymeX
Everything you need to visualize and edit DNA sequence files
Everything you need to visualize and edit DNA sequence files
Mozilla Science... Mozilla Science Lab
Community working to make research open and accessible
Community working to make research open and accessible
Science Open Science Open
Share and evaluate scientific information
Share and evaluate scientific information
Genomic Data Co... Genomic Data Commons Data Portal
Genomic Data Commons Data Portal
Genomic Data Commons Data Portal
The Interactome The Interactome
Visualize interactions of transcription factors
Visualize interactions of transcription factors
FunRich FunRich
Stand-alone software for functional enrichment and interaction ne...
Stand-alone software for functional enrichment and interaction network analysis
seeksv seeksv
Somatic SV detection and virus integration discovery
Somatic SV detection and virus integration discovery
SEQualyzer SEQualyzer
Visualize and quality control data from a wide range of structure...
Visualize and quality control data from a wide range of structure profiling experiments
biodb.jp biodb.jp
Maintain hyperlinks among major biological databases
Maintain hyperlinks among major biological databases
footprintDB footprintDB
Find TF annotated cis elements and binding interfaces
Find TF annotated cis elements and binding interfaces
SNPdryad SNPdryad
Deleterious Non-Synonymous SNP Predictions for Humans
Deleterious Non-Synonymous SNP Predictions for Humans
Statnews Statnews
Reporting from the frontiers of health and medicine
Reporting from the frontiers of health and medicine
Je suite Je suite
Handle barcoded fastq files with (or without) Unique Molecule Ide...
Handle barcoded fastq files with (or without) Unique Molecule Identifiers
biopieces biopieces
Biopieces is a bioinformatic framework of tools easily used and e...
Biopieces is a bioinformatic framework of tools easily used and easily created.
SciStart SciStart
SciStart turns scientific discoveries into startups
SciStart turns scientific discoveries into startups
HINT DB HINT DB
Find high-quality protein-protein interactions in different organ...
Find high-quality protein-protein interactions in different organisms
ReadXplorer ReadXplorer
Freely available comprehensive exploration and evaluation tool fo...
Freely available comprehensive exploration and evaluation tool for NGS data
PyMod 2.0 PyMod 2.0
Intuitive interface between PyMOL and other bioinformatics tools
Intuitive interface between PyMOL and other bioinformatics tools
DNAnexus DNAnexus
DNAnexus, a cloud-based genome informatics & data management plat...
DNAnexus, a cloud-based genome informatics & data management platform, is accelerating genomic medicine by making it easier to work with genomic data & tools.
CRISPR-DO CRISPR-DO
Designs and Optimize CRISPR-guides in several genomes
Designs and Optimize CRISPR-guides in several genomes
ChAsE ChAsE
Interactive graphical interface for analysis of epigenomic data
Interactive graphical interface for analysis of epigenomic data
SwiSpot SwiSpot
Command-line utility for predicting riboswitch alternative config...
Command-line utility for predicting riboswitch alternative configurations
Single Cell Por... Single Cell Portal
Single Cell Portal is a visualization portal for single cell RNA-...
Single Cell Portal is a visualization portal for single cell RNA-seq data.
GENOMENON GENOMENON
Scale your genome interpretation process with automated variant c...
Scale your genome interpretation process with automated variant curation
WhatsHap WhatsHap
Software for phasing genomic variants using DNA sequencing reads
Software for phasing genomic variants using DNA sequencing reads
Biostars.co Biostars.co
Accelerator for scientists, entrepreneurs, investors, pharma and...
Accelerator for scientists, entrepreneurs, investors, pharma and biotech
OpenCitations OpenCitations
Open repository of scholarly citation data
Open repository of scholarly citation data
GenomeCRISPR GenomeCRISPR
Find for high-throughput CRISPR/Cas9 screening experiments
Find for high-throughput CRISPR/Cas9 screening experiments
Morpheus Morpheus
Analyze gene expression heatmaps on the cloud
Analyze gene expression heatmaps on the cloud
Lab Leader Apps Lab Leader Apps
Software applications for experiment design
Software applications for experiment design
SeqPlots SeqPlots
Exploratory data analysis and visualization software for genomics
Exploratory data analysis and visualization software for genomics
PoGo PoGo
Proteogenomic tool for mapping peptides identified through mass...
Proteogenomic tool for mapping peptides identified through mass spectrometry
Open Microscopy... Open Microscopy Environment
Software & standards for the storage and manipulation of biologic...
Software & standards for the storage and manipulation of biological microscopy data
SCODE SCODE
Regulatory network inference algorithm from single-cell RNA-Seq d...
Regulatory network inference algorithm from single-cell RNA-Seq during differentiation
MetaMis MetaMis
Metagenomic Microbial Interaction Simulator
Metagenomic Microbial Interaction Simulator
Mockrobiota Mockrobiota
Microbiome bioinformatics benchmarking
Microbiome bioinformatics benchmarking
PARABOLA PARABOLA
Import, manipulate, and visualize your data without spreadsheets...
Import, manipulate, and visualize your data without spreadsheets or code.
InFlo InFlo
characterize activities of complex signaling networks in individu...
characterize activities of complex signaling networks in individual patient
RABIT RABIT
Regression analysis with background integration
Regression analysis with background integration
arpha arpha
Collaborative authoring, reviewing and publishing in one place
Collaborative authoring, reviewing and publishing in one place
InsideDNA InsideDNA
Computing platform for reproducible research in bioinformatics, g...
Computing platform for reproducible research in bioinformatics, genomics and life science
SeqKit SeqKit
Cross-platform and ultrafast toolkit for FASTA/Q file manipulatio...
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation
ZebrafishMine ZebrafishMine
Customize searches of Zebrafish related biological data
Customize searches of Zebrafish related biological data
PHI-base PHI-base
Find genes proven to affect the outcome of pathogen-host interact...
Find genes proven to affect the outcome of pathogen-host interactions
Caleydo Caleydo
Open source visual analysis framework targeted at biomolecular da...
Open source visual analysis framework targeted at biomolecular data